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AI in Drug Discovery Requires Extensive Chemical Libraries, Finds IDTechEx

AI in Drug Discovery Requires Extensive Chemical Libraries, Finds IDTechEx

人工智能在藥物研發中需要廣泛的化學圖書館,找到IDTechEx
StreetInsider ·  2021/08/18 05:18

BOSTON, Aug. 18, 2021 /PRNewswire/ -- AI in drug discovery is a field that has received an immense increase in interest, uptake, and investment over the past year due to the COVID-19 pandemic. While lockdowns forced everyone around the world to explore virtual ways of working, the biopharma industry faced the additional task of quickly developing new drugs for the treatment of COVID-19. Enter the application of AI in drug discovery – a technology that promises to drastically cut down timelines and costs, and potentially, develop safer and more efficacious drugs.

波士頓,2021年8月18日電/美通社/--在過去的一年裏,由於新冠肺炎大流行,藥物發現中的人工智能領域獲得了極大的興趣、吸收和投資。雖然封鎖迫使世界各地的每個人都探索虛擬的工作方式,但生物製藥行業面臨着快速開發治療新冠肺炎的新葯的額外任務。進入人工智能在藥物發現中的應用-這項技術有望大幅削減時間表和成本,並有可能開發出更安全、更有效的藥物。

IDTechEx have recently published a report, "AI in Drug Discovery 2021: Players, Technologies, and Applications" which covers this topic in detail. For more information, please visit www.IDTechEx.com/AIDisc

IDTechEx最近發表了一份名為“2021年藥物發現中的人工智能:玩家、技術和應用”的報告,詳細討論了這一主題。欲瞭解更多信息,請訪問www.IDTechEx.com/AIDisc。

How is AI Used in Drug Discovery?

人工智能是如何應用於藥物研發的?

AI can be applied at multiple stages across the drug discovery process, from the screening of compounds that interact with a target of interest (hit screening), design of new molecules (de novodrug design) through to the optimization of properties such as absorption and distribution (lead optimization).

人工智能可以應用於藥物發現過程的多個階段,從篩選與感興趣的目標相互作用的化合物(HIT篩選)、設計新分子(新葯設計)到吸收和分佈等性能的優化(先導優化)。

Structure-Based Hit Screening

基於結構的命中篩選

One of the most developed AI drug discovery technologies is its application in structure-based hit screening. Here, the task is to identify molecules from a database that can interact with a target that has a known 3D structure. With sufficient binding affinity, a molecule would be considered a "hit" worthy of further investigation. AI such as convolutional neural networks (CNNs), variational autoencoders (VAEs), and support vector machines (SVMs) are commonly used in structure-based hit screening. Researchers train algorithms using large, shared drug databases of experimentally derived results of ligand/target binding affinities, such as PubChem, ChEMBL, ChemBank, DrugBank, ChemBridge, and more.

最發達的人工智能藥物發現技術之一是它在基於結構的命中篩選中的應用。這裏的任務是從數據庫中識別可以與已知3D結構的目標相互作用的分子。有了足夠的結合親和力,一個分子將被認為是值得進一步研究的“熱門”分子。卷積神經網絡(CNNs)、變分自動編碼器(VAE)和支持向量機(SVMs)等人工智能通常用於基於結構的命中篩選。研究人員使用大型共享藥物數據庫(如PubChem、ChEMBL、ChemBank、DrugBank、ChemBridge等)訓練算法,這些數據庫包含配體/目標結合親和力的實驗結果。

De Novo Drug Design

De Novo藥物設計

Unlike virtual screening,de novodrug design focuses on the creation of new molecules from scratch –de novois Latin for "anew". Again, AI models are trained using chemical libraries and identify fragments and chemical groups required based on what is known about the target, such as its 3D structure or known fragments that bind. AI such as recurrent neural networks (RNNs) and generative adversarial networks (GANs) are often used inde novodrug design. Compounds can be represented as strings (simplified molecular-input line-entry specification, SMILES), and the AI simply predicts the next "character" in the string, which can be atoms, types of bonds, etc.

與虛擬篩選不同,de novoDrug設計的重點是從頭開始創造新分子-de novois拉丁語中“新的”的意思。同樣,人工智能模型使用化學庫進行訓練,並根據有關目標的已知信息(如其3D結構或結合的已知片段)識別所需的片段和化學組。在新葯設計中,常用的人工智能有遞歸神經網絡(RNNs)和生成性對抗網絡(GANS)。化合物可以表示為字符串(簡化的分子輸入行輸入規範,微笑),人工智能只需預測字符串中的下一個“字符”,可以是原子、鍵的類型等。

What are the Limitations of AI in Drug Discovery?

人工智能在藥物發現中的侷限性是什麼?

While the application of AI to drug discovery holds great promise, there are multiple factors holding the technology back. Many of these involve data.

雖然人工智能在藥物發現中的應用前景廣闊,但有多種因素阻礙了這項技術的發展。其中許多都涉及數據。

Biology is complex: Chemistry can be handled computationally but taking the example of structure-based hit screening, biology is not simply about structure. In many cases, researchers simply do not have sufficient biological information, or the understanding of which information is important, to train AI meaningfully. Researchers are also trying to determine the best ways to label biological information for AI training. As such, AI is exceedingly good atliganddiscovery, but less so atdrugdiscovery – just because a compound can bind to a target does not mean that it can have a physiologically beneficial response.

生物學是複雜的:化學可以通過計算來處理,但以基於結構的命中篩選為例,生物學不僅僅是關於結構的。在許多情況下,研究人員根本沒有足夠的生物信息,也沒有對哪些信息重要的理解,無法對人工智能進行有意義的訓練。研究人員也在試圖確定為人工智能培訓標記生物信息的最佳方式。因此,人工智能在配體發現方面非常好,但在藥物發現方面就不那麼好了--僅僅因為一種化合物可以與目標結合並不意味着它可以產生生理上有益的反應。

Negative results are not published: There are few avenues for publishing negative results as a part of the scientific method today. This has two major implications. First, there are very few datasets of negative results that can be used to train AI algorithms. Once a researcher knows that the drug efficacy is low (high concentration required to achieve 50% inhibition of the target), they often do not report the results. Second, failed results are never published, meaning that the same experiments may be repeatedly conducted by successive researchers who pick the compound out of the database.

負面結果不會被公佈:如今幾乎沒有途徑將負面結果作為科學方法的一部分來發布。這有兩個主要影響。首先,可以用來訓練人工智能算法的負面結果數據集非常少。一旦研究人員知道藥物療效低(需要高濃度才能達到目標的50%抑制率),他們通常不會報告結果。其次,失敗的結果永遠不會公佈,這意味着從數據庫中挑選化合物的後續研究人員可能會重複進行相同的實驗。

What's Next?

下一個是什麼?

The application of AI in drug discovery is helping to tackle big challenges of time and cost in drug development. There has been a surge in investment into AI drug discovery companies over the past 3 years, with increasingly many partnerships between AI companies and the biopharma industry. And while there are still key issues to be addressed in the development of AI for drug discovery, companies have already advanced several compounds into pivotal clinical trials without biopharma partners. The success of these candidates will definitively prove the value of AI in drug discovery.

人工智能在藥物發現中的應用有助於解決藥物開發中時間和成本方面的巨大挑戰。過去3年,對人工智能藥物發現公司的投資激增,人工智能公司與生物製藥行業之間的合作伙伴關係越來越多。雖然在開發用於藥物發現的人工智能方面仍有關鍵問題需要解決,但公司已經在沒有生物製藥合作伙伴的情況下,將幾種化合物推進到關鍵的臨牀試驗中。這些候選人的成功將最終證明人工智能在藥物發現中的價值。

For more information on "AI in Drug Discovery 2021: Players, Technologies, and Applications", please visit www.IDTechEx.com/AIDisc, for the full portfolio of Healthcare related research available from IDTechEx please visit www.IDTechEx.com/Research/Healthcare.

有關“2021年藥物發現中的人工智能:玩家、技術和應用”的更多信息,請訪問www.IDTechEx.com/AIDisc。有關IDTechEx提供的醫療保健相關研究的完整組合,請訪問www.IDTechEx.com/Research/Healthcare。

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