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AI in Drug Discovery Requires Extensive Chemical Libraries, Finds IDTechEx

AI in Drug Discovery Requires Extensive Chemical Libraries, Finds IDTechEx

人工智能在药物研发中需要广泛的化学图书馆,找到IDTechEx
StreetInsider ·  2021/08/18 05:18

BOSTON, Aug. 18, 2021 /PRNewswire/ -- AI in drug discovery is a field that has received an immense increase in interest, uptake, and investment over the past year due to the COVID-19 pandemic. While lockdowns forced everyone around the world to explore virtual ways of working, the biopharma industry faced the additional task of quickly developing new drugs for the treatment of COVID-19. Enter the application of AI in drug discovery – a technology that promises to drastically cut down timelines and costs, and potentially, develop safer and more efficacious drugs.

波士顿,2021年8月18日电/美通社/--在过去的一年里,由于新冠肺炎大流行,药物发现中的人工智能领域获得了极大的兴趣、吸收和投资。虽然封锁迫使世界各地的每个人都探索虚拟的工作方式,但生物制药行业面临着快速开发治疗新冠肺炎的新药的额外任务。进入人工智能在药物发现中的应用-这项技术有望大幅削减时间表和成本,并有可能开发出更安全、更有效的药物。

IDTechEx have recently published a report, "AI in Drug Discovery 2021: Players, Technologies, and Applications" which covers this topic in detail. For more information, please visit www.IDTechEx.com/AIDisc

IDTechEx最近发表了一份名为“2021年药物发现中的人工智能:玩家、技术和应用”的报告,详细讨论了这一主题。欲了解更多信息,请访问www.IDTechEx.com/AIDisc。

How is AI Used in Drug Discovery?

人工智能是如何应用于药物研发的?

AI can be applied at multiple stages across the drug discovery process, from the screening of compounds that interact with a target of interest (hit screening), design of new molecules (de novodrug design) through to the optimization of properties such as absorption and distribution (lead optimization).

人工智能可以应用于药物发现过程的多个阶段,从筛选与感兴趣的目标相互作用的化合物(HIT筛选)、设计新分子(新药设计)到吸收和分布等性能的优化(先导优化)。

Structure-Based Hit Screening

基于结构的命中筛选

One of the most developed AI drug discovery technologies is its application in structure-based hit screening. Here, the task is to identify molecules from a database that can interact with a target that has a known 3D structure. With sufficient binding affinity, a molecule would be considered a "hit" worthy of further investigation. AI such as convolutional neural networks (CNNs), variational autoencoders (VAEs), and support vector machines (SVMs) are commonly used in structure-based hit screening. Researchers train algorithms using large, shared drug databases of experimentally derived results of ligand/target binding affinities, such as PubChem, ChEMBL, ChemBank, DrugBank, ChemBridge, and more.

最发达的人工智能药物发现技术之一是它在基于结构的命中筛选中的应用。这里的任务是从数据库中识别可以与已知3D结构的目标相互作用的分子。有了足够的结合亲和力,一个分子将被认为是值得进一步研究的“热门”分子。卷积神经网络(CNNs)、变分自动编码器(VAE)和支持向量机(SVMs)等人工智能通常用于基于结构的命中筛选。研究人员使用大型共享药物数据库(如PubChem、ChEMBL、ChemBank、DrugBank、ChemBridge等)训练算法,这些数据库包含配体/目标结合亲和力的实验结果。

De Novo Drug Design

De Novo药物设计

Unlike virtual screening,de novodrug design focuses on the creation of new molecules from scratch –de novois Latin for "anew". Again, AI models are trained using chemical libraries and identify fragments and chemical groups required based on what is known about the target, such as its 3D structure or known fragments that bind. AI such as recurrent neural networks (RNNs) and generative adversarial networks (GANs) are often used inde novodrug design. Compounds can be represented as strings (simplified molecular-input line-entry specification, SMILES), and the AI simply predicts the next "character" in the string, which can be atoms, types of bonds, etc.

与虚拟筛选不同,de novoDrug设计的重点是从头开始创造新分子-de novois拉丁语中“新的”的意思。同样,人工智能模型使用化学库进行训练,并根据有关目标的已知信息(如其3D结构或结合的已知片段)识别所需的片段和化学组。在新药设计中,常用的人工智能有递归神经网络(RNNs)和生成性对抗网络(GANS)。化合物可以表示为字符串(简化的分子输入行输入规范,微笑),人工智能只需预测字符串中的下一个“字符”,可以是原子、键的类型等。

What are the Limitations of AI in Drug Discovery?

人工智能在药物发现中的局限性是什么?

While the application of AI to drug discovery holds great promise, there are multiple factors holding the technology back. Many of these involve data.

虽然人工智能在药物发现中的应用前景广阔,但有多种因素阻碍了这项技术的发展。其中许多都涉及数据。

Biology is complex: Chemistry can be handled computationally but taking the example of structure-based hit screening, biology is not simply about structure. In many cases, researchers simply do not have sufficient biological information, or the understanding of which information is important, to train AI meaningfully. Researchers are also trying to determine the best ways to label biological information for AI training. As such, AI is exceedingly good atliganddiscovery, but less so atdrugdiscovery – just because a compound can bind to a target does not mean that it can have a physiologically beneficial response.

生物学是复杂的:化学可以通过计算来处理,但以基于结构的命中筛选为例,生物学不仅仅是关于结构的。在许多情况下,研究人员根本没有足够的生物信息,也没有对哪些信息重要的理解,无法对人工智能进行有意义的训练。研究人员也在试图确定为人工智能培训标记生物信息的最佳方式。因此,人工智能在配体发现方面非常好,但在药物发现方面就不那么好了--仅仅因为一种化合物可以与目标结合并不意味着它可以产生生理上有益的反应。

Negative results are not published: There are few avenues for publishing negative results as a part of the scientific method today. This has two major implications. First, there are very few datasets of negative results that can be used to train AI algorithms. Once a researcher knows that the drug efficacy is low (high concentration required to achieve 50% inhibition of the target), they often do not report the results. Second, failed results are never published, meaning that the same experiments may be repeatedly conducted by successive researchers who pick the compound out of the database.

负面结果不会被公布:如今几乎没有途径将负面结果作为科学方法的一部分来发布。这有两个主要影响。首先,可以用来训练人工智能算法的负面结果数据集非常少。一旦研究人员知道药物疗效低(需要高浓度才能达到目标的50%抑制率),他们通常不会报告结果。其次,失败的结果永远不会公布,这意味着从数据库中挑选化合物的后续研究人员可能会重复进行相同的实验。

What's Next?

下一个是什么?

The application of AI in drug discovery is helping to tackle big challenges of time and cost in drug development. There has been a surge in investment into AI drug discovery companies over the past 3 years, with increasingly many partnerships between AI companies and the biopharma industry. And while there are still key issues to be addressed in the development of AI for drug discovery, companies have already advanced several compounds into pivotal clinical trials without biopharma partners. The success of these candidates will definitively prove the value of AI in drug discovery.

人工智能在药物发现中的应用有助于解决药物开发中时间和成本方面的巨大挑战。过去3年,对人工智能药物发现公司的投资激增,人工智能公司与生物制药行业之间的合作伙伴关系越来越多。虽然在开发用于药物发现的人工智能方面仍有关键问题需要解决,但公司已经在没有生物制药合作伙伴的情况下,将几种化合物推进到关键的临床试验中。这些候选人的成功将最终证明人工智能在药物发现中的价值。

For more information on "AI in Drug Discovery 2021: Players, Technologies, and Applications", please visit www.IDTechEx.com/AIDisc, for the full portfolio of Healthcare related research available from IDTechEx please visit www.IDTechEx.com/Research/Healthcare.

有关“2021年药物发现中的人工智能:玩家、技术和应用”的更多信息,请访问www.IDTechEx.com/AIDisc。有关IDTechEx提供的医疗保健相关研究的完整组合,请访问www.IDTechEx.com/Research/Healthcare。

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About IDTechEx

关于IDTechEx

IDTechEx guides your strategic business decisions through its Research, Subscription and Consultancy products, helping you profit from emerging technologies. For more information, contact research@IDTechEx.com or visit www.IDTechEx.com.

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